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Juffo-Wup is a concept which the Mycon often make mention of along with the Non and the Void. It's true meaning, as most of the Mycon ramblings, will remain a mystery, though from the way they use the name, it probably means the spread of the Mycon race.
"A single spore lands, finds nourishment in decay, grows and attains maturity. It, in turn exhales a cloud of spores, which land, find nourishment in decay and grow. So progresses Juffo-Wup."
Though from its other uses, like the infamous "Juffo-Wup fills in my fibers and I grow turgid. Violent action ensues." it could be deciphered to mean some kind of omnipotent entity however, as the phrase's religious nature can not be denied.